STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_04650COG0515 Serine/threonine protein kinase. (580 aa)    
Predicted Functional Partners:
RAM_00275
COG0631 Serine/threonine protein phosphatase.
 
 
 0.839
RAM_45875
COG0631 Serine/threonine protein phosphatase.
 
 
 0.839
RAM_18985
COG0631 Serine/threonine protein phosphatase.
 
 
 0.837
RAM_25405
FHA domain-containing protein; COG1716 FOG: FHA domain.
 
 
 
 0.732
RAM_11800
COG0515 Serine/threonine protein kinase.
 
 
0.615
RAM_00255
COG0515 Serine/threonine protein kinase.
 
 
0.613
RAM_04655
COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.
       0.552
RAM_04660
COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.
       0.546
RAM_22185
FHA domain-containing protein; COG1716 FOG: FHA domain.
 
 
 
 0.545
RAM_34690
COG0631 Serine/threonine protein phosphatase.
 
 
 0.541
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.