STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_04755Hypothetical protein. (178 aa)    
Predicted Functional Partners:
RAM_04750
Hypothetical protein.
 
    
0.810
RAM_00510
Hypothetical protein; COG2251 Predicted nuclease (RecB family).
  
     0.651
RAM_04760
Acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein; COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit.
       0.614
RAM_43445
ABC transporter permease; COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
    0.611
RAM_18025
ABC transporter permease; COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
    0.607
RAM_02520
COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
    0.554
RAM_04505
COG4758 Predicted membrane protein.
  
     0.547
RAM_08490
ACT domain-containing protein.
  
     0.526
RAM_04745
Hypothetical protein.
       0.523
pheT
phenylalanyl-tRNA synthetase subunit beta; COG0073 EMAP domain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.507
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.