STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_04815acetyl/propionyl-CoA carboxylase, epsilon subunit. (74 aa)    
Predicted Functional Partners:
RAM_04820
COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
  
 0.987
RAM_04760
Acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein; COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit.
   
 0.967
RAM_17130
COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
  
 0.947
RAM_13390
UreA amidolyase; COG0439 Biotin carboxylase.
   
 
 0.943
CitE-2
COG2301 Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.
     
  0.900
Mce
methylmalonyl-CoA epimerase; COG0346 Lactoylglutathione lyase and related lyases.
     
  0.900
MmsA
COG1012 NAD-dependent aldehyde dehydrogenases.
     
  0.900
RAM_22825
COG3321 Polyketide synthase modules and related proteins.
     
  0.900
Acs-2
COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases.
     
  0.900
Acs-3
COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases.
     
  0.900
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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