STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_04825Hypothetical protein; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases. (264 aa)    
Predicted Functional Partners:
RAM_04815
acetyl/propionyl-CoA carboxylase, epsilon subunit.
       0.559
RAM_04820
COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
       0.559
RAM_05275
COG3227 Zinc metalloprotease (elastase).
  
     0.539
RAM_05285
Zinc metalloprotease; Extracellular zinc metalloprotease.
  
     0.526
RAM_15290
Hypothetical protein.
  
     0.489
RAM_31545
Hypothetical protein.
 
   
 0.468
CpbD-4
COG3397 Uncharacterized protein conserved in bacteria.
  
     0.452
RAM_41845
TlpA-like family protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
 
     0.417
RAM_10235
Hypothetical protein.
  
     0.410
RAM_41090
Hypothetical protein.
 
     0.400
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.