STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_04935Hypothetical protein. (106 aa)    
Predicted Functional Partners:
RAM_04940
COG4585 Signal transduction histidine kinase.
 
     0.853
RAM_04930
Glyoxalase/bleomycin resistance protein/dioxygenase; COG3324 Predicted enzyme related to lactoylglutathione lyase.
       0.768
RAM_31595
Hypothetical protein.
  
     0.740
RAM_01860
TraI.
  
     0.721
RAM_21235
Hypothetical protein.
  
     0.685
RAM_04945
COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
 
     0.584
RAM_04925
Hypothetical protein.
       0.543
RAM_21400
Integral membrane protein.
  
     0.508
RAM_41845
TlpA-like family protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
  
     0.495
RAM_35925
Hypothetical protein.
  
     0.489
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.