STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_04950Nlp/P60; COG2951 Membrane-bound lytic murein transglycosylase B. (342 aa)    
Predicted Functional Partners:
FtsX
Cell division transport system permease protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
 
 
 0.711
RAM_30875
Hypothetical protein.
   
 
 0.664
BirA
COG0340 Biotin-(acetyl-CoA carboxylase) ligase.
       0.560
RAM_30125
NLP/P60-family protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins).
 
  
0.466
ftsE
Cell division transport system ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
  
 
 0.426
RAM_25220
Hypothetical protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins).
 
  
0.404
RAM_04960
Membrane protein.
       0.402
HmgL
hydroxymethylglutaryl-CoA lyase; COG0119 Isopropylmalate/homocitrate/citramalate synthases.
       0.402
mscL
Large conductance mechanosensitive channel, MscL family protein; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.
  
     0.402
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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