STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_05025COG2246 Predicted membrane protein. (169 aa)    
Predicted Functional Partners:
RAM_05030
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
       0.785
RAM_05020
COG2246 Predicted membrane protein.
 
    
0.651
RAM_31375
Hypothetical protein.
 
   
 0.529
RAM_46950
Hypothetical protein; COG0147 Anthranilate/para-aminobenzoate synthases component I.
 
     0.481
RAM_11140
Hypothetical protein.
  
     0.470
RAM_00025
Hypothetical protein; COG5512 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives.
  
     0.464
RAM_05035
Hypothetical protein.
       0.448
RAM_34330
Hypothetical protein.
  
     0.427
RAM_12110
Transmembrane protein.
  
     0.419
RAM_12440
Hypothetical protein.
  
     0.416
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.