STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_05030COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (705 aa)    
Predicted Functional Partners:
RAM_05035
Hypothetical protein.
 
     0.817
RAM_05025
COG2246 Predicted membrane protein.
       0.785
RAM_05020
COG2246 Predicted membrane protein.
 
     0.694
RAM_47460
Hypothetical protein.
  
     0.635
RAM_11305
Hypothetical protein.
  
     0.576
RAM_05430
Hypothetical protein.
 
 
 0.547
RAM_47465
Dynamin; COG0699 Predicted GTPases (dynamin-related).
  
     0.530
RAM_11240
COG3688 Predicted RNA-binding protein containing a PIN domain.
 
    0.508
RAM_46950
Hypothetical protein; COG0147 Anthranilate/para-aminobenzoate synthases component I.
  
     0.506
RAM_31290
Hypothetical protein.
 
   
 0.505
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.