STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_05105Hypothetical protein; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II. (234 aa)    
Predicted Functional Partners:
RAM_25120
Hypothetical protein.
  
     0.683
RAM_39930
Hypothetical protein.
  
     0.672
RAM_08470
vitamin-B12 independent methionine synthase.
 
  
 0.657
RAM_10375
Acetyltransferase; COG3393 Predicted acetyltransferase.
  
     0.582
RAM_42365
Transglycosylase; COG3583 Uncharacterized protein conserved in bacteria.
  
     0.573
RAM_43720
COG1652 Uncharacterized protein containing LysM domain.
  
     0.570
RAM_08850
Hypothetical protein.
  
     0.563
RAM_43755
Hypothetical protein.
  
     0.547
RAM_05110
Nucleotide-diphosphate-sugar epimerase/NmrA family protein; COG0702 Predicted nucleoside-diphosphate-sugar epimerases.
  
    0.546
RAM_04190
Hypothetical protein.
  
     0.540
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.