STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_05175Hypothetical protein; COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase. (298 aa)    
Predicted Functional Partners:
RAM_05170
Mannose-1-phosphate guanylyltransferase; COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon).
  
    0.856
RAM_05165
Hypothetical protein.
       0.564
XthA
COG0708 Exonuclease III.
   
 0.497
XthA-2
COG0708 Exonuclease III.
   
 0.497
ligC
COG1793 ATP-dependent DNA ligase.
 
  
 0.463
RAM_24810
COG0258 5'-3' exonuclease (including N-terminal domain of PolI).
 
 
 
 0.442
RAM_02305
Hypothetical protein.
  
     0.438
RAM_06130
COG3336 Predicted membrane protein.
      
 0.433
Nfo
COG0648 Endonuclease IV.
   
 
 0.424
RAM_04220
Hypothetical protein; COG0177 Predicted EndoIII-related endonuclease.
 
 
 
 0.415
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.