STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_05220Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (106 aa)    
Predicted Functional Partners:
RAM_05225
COG0436 Aspartate/tyrosine/aromatic aminotransferase.
    
 0.937
NuoF-2
COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit.
   
 
 0.804
KorA
COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit.
  
 
 0.792
NuoE
COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit.
   
 
 0.727
Fpr
ferredoxin--NADP+ reductase; COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
 
 
 
 0.669
Fpr-2
ferredoxin--NADP+ reductase; COG1146 Ferredoxin.
   
 
 0.654
FadH
NADPH-dependent 2,4-dienoyl-CoA reductase; COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.
   
 
 0.648
GltD
COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
   
 
 0.561
GltD-2
COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
   
 
 0.561
RAM_05210
GCN5-related N-acetyltransferase; COG0006 Xaa-Pro aminopeptidase.
       0.555
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.