STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_05265Endochitinase; COG3469 Chitinase; Belongs to the glycosyl hydrolase 18 family. (335 aa)    
Predicted Functional Partners:
RAM_25705
Chitinase; COG3979 Uncharacterized protein contain chitin-binding domain type 3.
 
  
 0.798
CpbD-4
COG3397 Uncharacterized protein conserved in bacteria.
 
  
 0.681
CpbD-2
COG3397 Uncharacterized protein conserved in bacteria.
 
  
 0.654
RAM_26755
Coagulation factor 5/8 type; COG3291 FOG: PKD repeat.
 
  
 0.646
RAM_24730
Chitinase.
  
 0.642
Aes-6
Esterase/lipase; COG4188 Predicted dienelactone hydrolase.
  
    0.639
RAM_38330
Esterase/lipase; COG4188 Predicted dienelactone hydrolase.
  
    0.627
RAM_18470
Hypothetical protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
    0.608
RAM_44460
Hypothetical protein.
 
  
 0.589
RAM_20500
3-oxoacyl-(ACP) synthase III.
  
     0.567
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.