STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_05270Aminopeptidase; COG2234 Predicted aminopeptidases. (534 aa)    
Predicted Functional Partners:
RAM_30400
COG3227 Zinc metalloprotease (elastase).
  
 0.702
RAM_05275
COG3227 Zinc metalloprotease (elastase).
 
  
0.700
RAM_39990
COG4412 Uncharacterized protein conserved in bacteria.
  
   
 0.549
RAM_01400
COG3325 Chitinase.
  
   
 0.536
RAM_02620
Metallopeptidase; COG0308 Aminopeptidase N.
 
 
 
 0.514
RAM_12545
COG3325 Chitinase; Belongs to the glycosyl hydrolase 18 family.
  
   
 0.489
RAM_07165
Metallopeptidase; COG0308 Aminopeptidase N.
 
 
 
 0.483
RAM_38640
COG3325 Chitinase; Belongs to the glycosyl hydrolase 18 family.
  
   
 0.477
RAM_44955
COG2866 Predicted carboxypeptidase.
  
 0.462
RAM_05265
Endochitinase; COG3469 Chitinase; Belongs to the glycosyl hydrolase 18 family.
       0.461
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.