STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_05285Zinc metalloprotease; Extracellular zinc metalloprotease. (672 aa)    
Predicted Functional Partners:
RAM_05280
XRE family transcriptional regulator.
 
     0.662
RAM_08580
COG3631 Ketosteroid isomerase-related protein.
  
  
 0.542
RAM_15290
Hypothetical protein.
  
     0.529
RAM_04825
Hypothetical protein; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
  
     0.526
CpbD-4
COG3397 Uncharacterized protein conserved in bacteria.
  
  
 0.521
RAM_05290
COG1396 Predicted transcriptional regulators.
 
     0.519
RAM_09540
Hypothetical protein; COG0823 Periplasmic component of the Tol biopolymer transport system.
  
     0.465
CpbD-3
COG3397 Uncharacterized protein conserved in bacteria.
   
  
 0.461
RAM_40265
COG0789 Predicted transcriptional regulators.
  
    0.454
RAM_41090
Hypothetical protein.
  
     0.454
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.