STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_05285Zinc metalloprotease; Extracellular zinc metalloprotease. (672 aa)    
Predicted Functional Partners:
RAM_05280
XRE family transcriptional regulator.
 
     0.663
RAM_08580
COG3631 Ketosteroid isomerase-related protein.
  
    0.530
RAM_15290
Hypothetical protein.
  
     0.529
RAM_04825
Hypothetical protein; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
  
     0.526
PhoA
Alkaline phosphatase; COG3291 FOG: PKD repeat.
 
  
 0.526
RAM_05290
COG1396 Predicted transcriptional regulators.
 
     0.519
CpbD-4
COG3397 Uncharacterized protein conserved in bacteria.
  
  
 0.504
RAM_35860
Chitosanase; Aids in the defense against invading fungal pathogens by degrading their cell wall chitosan.
 
  
 0.496
RAM_11700
COG5479 Uncharacterized protein potentially involved in peptidoglycan biosynthesis.
   
  
 0.478
RAM_09540
Hypothetical protein; COG0823 Periplasmic component of the Tol biopolymer transport system.
 
     0.465
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.