STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_05290COG1396 Predicted transcriptional regulators. (428 aa)    
Predicted Functional Partners:
RAM_11355
Hypothetical protein.
  
     0.765
RAM_01110
Hypothetical protein.
  
     0.723
RAM_45695
Hypothetical protein.
  
     0.721
RAM_09140
Hypothetical protein.
  
     0.718
RAM_47895
Probable ADP-ribosylglycohydrolase.
  
     0.680
RAM_11430
Integral membrane protein.
  
     0.675
RAM_47880
NAD:arginine ADP-ribosyltransferase with a RelA/SpoT domain; COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases.
 
     0.663
RAM_21645
Copper binding protein of plastocyanin/azurin family; COG3794 Plastocyanin.
  
     0.661
RAM_11425
Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.
  
    0.658
RAM_02150
Hypothetical protein.
  
     0.652
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.