STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_05315COG1216 Predicted glycosyltransferases. (299 aa)    
Predicted Functional Partners:
RAM_05310
COG0438 Glycosyltransferase.
 
  
 0.941
Glf
COG0562 UDP-galactopyranose mutase.
 
  
 0.818
RAM_05325
Acyltransferase; COG1835 Predicted acyltransferases.
 
   
 0.765
RAM_05320
Hypothetical protein.
 
     0.693
RAM_01215
COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
  
  
 0.692
RAM_05330
Hypothetical protein.
 
  
 0.623
RAM_32760
Hypothetical protein.
  
     0.620
RAM_01210
COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component.
 
  
 0.569
RAM_05305
Hypothetical protein.
       0.531
RAM_18760
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.446
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.