STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_05325Acyltransferase; COG1835 Predicted acyltransferases. (459 aa)    
Predicted Functional Partners:
RAM_05320
Hypothetical protein.
 
     0.934
RAM_05310
COG0438 Glycosyltransferase.
 
  
 0.795
RAM_05315
COG1216 Predicted glycosyltransferases.
 
   
 0.765
RAM_05330
Hypothetical protein.
     
 0.649
RAM_20990
ATPase; COG2251 Predicted nuclease (RecB family).
 
    0.576
RAM_20170
COG1680 Beta-lactamase class C and other penicillin binding proteins.
  
   
 0.509
RAM_42920
Acyltransferase; COG1835 Predicted acyltransferases.
  
     0.509
RAM_17350
Ricin-type beta-trefoil lectin domain-containing protein.
 
     0.490
RAM_20890
Fused protein kinase and phosphatase containing multi-sensor domain; COG2202 FOG: PAS/PAC domain.
 
    0.458
RAM_32760
Hypothetical protein.
  
   
 0.443
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.