STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_05330Hypothetical protein. (287 aa)    
Predicted Functional Partners:
RAM_05325
Acyltransferase; COG1835 Predicted acyltransferases.
     
 0.652
RAM_05320
Hypothetical protein.
       0.631
RAM_05315
COG1216 Predicted glycosyltransferases.
 
  
 0.628
RAM_21980
Hypothetical protein; COG2508 Regulator of polyketide synthase expression.
  
     0.589
RAM_05310
COG0438 Glycosyltransferase.
 
   
 0.571
RAM_09155
Hypothetical protein.
  
     0.497
RAM_21115
Hypothetical protein.
  
     0.494
RAM_07550
LuxR family transcriptional regulator; COG2771 DNA-binding HTH domain-containing proteins.
  
     0.492
RAM_31185
Hypothetical protein.
 
   
 0.490
RAM_41555
Protein phosphatase; COG4639 Predicted kinase.
   
   0.474
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.