STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CydA-2COG1271 Cytochrome bd-type quinol oxidase, subunit 1. (386 aa)    
Predicted Functional Partners:
CydB-2
COG1294 Cytochrome bd-type quinol oxidase, subunit 2.
 
 0.999
CydB
COG1294 Cytochrome bd-type quinol oxidase, subunit 2.
 
 0.978
CydB-3
COG1294 Cytochrome bd-type quinol oxidase, subunit 2.
 
 0.978
RAM_05350
COG4988 ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components.
 
  
 0.972
RAM_27915
COG4988 ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components.
 
  
 0.963
RAM_05345
ABC transporter ATPase/permease; COG4987 ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components.
 
  
 0.944
RAM_00835
COG4988 ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components.
 
  
 0.942
CydA
COG1271 Cytochrome bd-type quinol oxidase, subunit 1.
  
  
 
0.912
CydA-3
COG1271 Cytochrome bd-type quinol oxidase, subunit 1.
  
  
 
0.907
nuoH
NADH dehydrogenase I subunit H; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.
     
 0.642
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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