STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_05365COG1695 Predicted transcriptional regulators. (105 aa)    
Predicted Functional Partners:
RAM_05370
Hypothetical protein.
 
     0.858
RAM_05375
Hypothetical protein.
       0.779
RAM_05380
Hypothetical protein.
       0.779
Tag
COG2818 3-methyladenine DNA glycosylase.
       0.779
PadR
Transcriptional regulator, PadR-like family; COG1695 Predicted transcriptional regulators.
  
     0.722
CydB-2
COG1294 Cytochrome bd-type quinol oxidase, subunit 2.
       0.567
CydA-2
COG1271 Cytochrome bd-type quinol oxidase, subunit 1.
       0.567
RAM_05350
COG4988 ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components.
       0.476
RAM_05345
ABC transporter ATPase/permease; COG4987 ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components.
       0.475
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.