STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_05515COG1983 Putative stress-responsive transcriptional regulator. (79 aa)    
Predicted Functional Partners:
PspA
COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription.
  
 
 0.870
RAM_06705
Hypothetical protein.
 
  
 0.674
RAM_04005
COG1983 Putative stress-responsive transcriptional regulator.
 
   
 0.669
RAM_05510
Hypothetical protein.
       0.472
MtrB-4
COG0642 Signal transduction histidine kinase.
  
   0.448
RAM_40820
HAMP domain-containing protein invoved in signal transduction; COG0642 Signal transduction histidine kinase.
  
   0.423
RAM_05435
COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
  
  
 0.414
RAM_05725
Hypothetical protein.
 
  
 0.414
RAM_27165
COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
  
  
 0.414
PepD
COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
  
  
 0.414
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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