STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_05540CAAX amino terminal protease; COG1266 Predicted metal-dependent membrane protease. (277 aa)    
Predicted Functional Partners:
RAM_05535
COG4585 Signal transduction histidine kinase.
 
     0.943
RAM_05530
COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
 
     0.849
RpoE-10
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
       0.511
RAM_05550
Hypothetical protein.
       0.511
RAM_36255
COG0842 ABC-type multidrug transport system, permease component.
  
    0.447
RAM_19350
COG3209 Rhs family protein.
  
     0.418
RAM_22260
Hypothetical protein.
  
  
 0.412
RAM_30510
Hypothetical protein; COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases.
  
  
 0.412
RAM_35345
Hypothetical protein.
  
  
 0.412
CpbD-2
COG3397 Uncharacterized protein conserved in bacteria.
  
     0.410
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.