STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_05560Phosphoesterase; COG1409 Predicted phosphohydrolases. (216 aa)    
Predicted Functional Partners:
RAM_05555
Hypothetical protein; COG1475 Predicted transcriptional regulators.
 
     0.952
RAM_47775
Hypothetical protein.
 
     0.798
RAM_05565
Hypothetical protein.
       0.697
RAM_25300
Hypothetical protein.
  
     0.624
TbpA
COG4143 ABC-type thiamine transport system, periplasmic component.
  
     0.587
corA
Metal ion transporter MIT family protein; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.
       0.585
RAM_34215
Hypothetical protein.
  
     0.525
RAM_41140
Integral membrane protein.
  
     0.466
RAM_44795
Hypothetical protein.
  
     0.461
RAM_41310
COG1178 ABC-type Fe3+ transport system, permease component.
  
     0.432
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.