STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_05640Hypothetical protein. (76 aa)    
Predicted Functional Partners:
RAM_11175
Integral membrane protein; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
     0.747
QcrC
COG2010 Cytochrome c, mono- and diheme variants.
  
     0.726
RAM_05635
Hypothetical protein.
       0.674
RAM_29215
Hypothetical protein; COG1290 Cytochrome b subunit of the bc complex.
  
     0.651
RAM_32160
Transmembrane protein.
  
     0.648
RAM_33545
COG1290 Cytochrome b subunit of the bc complex.
  
     0.648
RAM_13430
Hypothetical protein.
  
     0.639
RAM_24865
HTH type 11 transcriptional regulator; COG2378 Predicted transcriptional regulator.
  
     0.596
RAM_13240
Hypothetical protein.
  
     0.595
rbpA-2
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.576
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.