STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_05660Hypothetical protein; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II. (302 aa)    
Predicted Functional Partners:
RAM_05650
Flavin binding monooxygenase.
 
     0.901
RAM_05665
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
    0.799
RAM_05655
COG1309 Transcriptional regulator.
 
     0.689
Fpr-2
ferredoxin--NADP+ reductase; COG1146 Ferredoxin.
 
    0.640
PaaB
Phenylacetic acid degradation protein PaaB; COG3460 Uncharacterized enzyme of phenylacetate metabolism.
  
 
 0.547
RAM_35620
Hypothetical protein; COG3175 Cytochrome oxidase assembly factor.
  
     0.537
RAM_06760
Hypothetical protein.
  
     0.505
RAM_34470
GDSL family lipase.
  
     0.497
RAM_06005
Hypothetical protein.
  
     0.494
RAM_20100
Hypothetical protein.
  
     0.475
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.