STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_05725Hypothetical protein. (220 aa)    
Predicted Functional Partners:
NasK
COG2223 Nitrate/nitrite transporter.
 
     0.591
RAM_00105
Hypothetical protein; COG0346 Lactoylglutathione lyase and related lyases.
  
     0.573
NasA
Nitrate reductase catalytic subunit; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
       0.541
NasC
Electron transfer subunit of assimilatory nitrate reductase; COG1251 NAD(P)H-nitrite reductase.
       0.535
NasB
Nitrite reductase (NAD(P)H) large subunit; COG1251 NAD(P)H-nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
       0.535
NasD
COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases.
       0.535
HemD-2
COG1587 Uroporphyrinogen-III synthase.
       0.535
RAM_04020
Two-component system sensor kinase; COG1983 Putative stress-responsive transcriptional regulator.
  
  
 0.484
RAM_00135
SARP family transcriptional regulator; COG3903 Predicted ATPase.
  
     0.443
RAM_05515
COG1983 Putative stress-responsive transcriptional regulator.
 
  
 0.440
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.