STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_05830Hypothetical protein. (569 aa)    
Predicted Functional Partners:
RAM_05835
Hypothetical protein.
 
    
0.815
RAM_05840
Peptidase M16; COG0612 Predicted Zn-dependent peptidases.
       0.782
RAM_05845
Peptidase M16; COG0612 Predicted Zn-dependent peptidases.
       0.781
NudC
NAD+ diphosphatase; COG2816 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding.
       0.778
RAM_39185
TPR repeat-containing protein; COG0457 FOG: TPR repeat.
 
     0.642
RAM_37525
Hypothetical protein.
 
     0.637
RAM_31795
Hypothetical protein.
 
     0.577
RAM_47860
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
    0.577
RAM_11200
Hypothetical protein.
  
     0.568
RAM_46530
TetR family transcriptional regulator; COG3226 Uncharacterized protein conserved in bacteria.
  
    0.530
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.