STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_05855COG1940 Transcriptional regulator/sugar kinase. (399 aa)    
Predicted Functional Partners:
RAM_05880
COG2971 Predicted N-acetylglucosamine kinase.
 
   
 0.820
RAM_05860
COG1653 ABC-type sugar transport system, periplasmic component.
 
    0.803
RAM_05865
COG1175 ABC-type sugar transport systems, permease components.
 
     0.782
Glk-3
Glucokinase; COG1940 Transcriptional regulator/sugar kinase.
  
     0.771
RAM_47640
COG1940 Transcriptional regulator/sugar kinase.
  
     0.771
Glk-2
Glucokinase; COG1940 Transcriptional regulator/sugar kinase.
 
     0.769
Glk
Glucokinase; COG1940 Transcriptional regulator/sugar kinase.
 
     0.768
RAM_34750
COG1940 Transcriptional regulator/sugar kinase.
  
     0.764
RAM_43005
COG1940 Transcriptional regulator/sugar kinase.
  
     0.763
CelF
6-phospho-beta-glucosidase; COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases.
 
  
 0.762
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.