STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_05900gluconate:H+ symporter, GntP family protein; COG2610 H+/gluconate symporter and related permeases. (455 aa)    
Predicted Functional Partners:
GntK
Gluconokinase; COG3265 Gluconate kinase.
 
  
 0.923
RAM_05910
COG2186 Transcriptional regulators.
 
   
 0.699
Gnd
6-phosphogluconate dehydrogenase-like protein; COG1023 Predicted 6-phosphogluconate dehydrogenase.
 
  
 0.602
RAM_05895
Hypothetical protein.
       0.532
GlxK-2
COG1929 Glycerate kinase; Belongs to the glycerate kinase type-1 family.
 
  
 0.517
GlxK
COG1929 Glycerate kinase; Belongs to the glycerate kinase type-1 family.
 
  
 0.511
FruA
PTS system, fructose-specific IIBC component; COG1445 Phosphotransferase system fructose-specific component IIB.
     
 0.482
cobD
Adenosylcobinamide-phosphate synthase CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
       0.457
xylB
D-xylulose kinase; COG1070 Sugar (pentulose and hexulose) kinases.
  
  
 0.442
RhaB
Rhamnulokinase; COG1070 Sugar (pentulose and hexulose) kinases.
  
  
 0.442
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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