STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_05910COG2186 Transcriptional regulators. (234 aa)    
Predicted Functional Partners:
RAM_05900
gluconate:H+ symporter, GntP family protein; COG2610 H+/gluconate symporter and related permeases.
 
   
 0.699
VanR
COG1802 Transcriptional regulators.
 
  
 0.671
GntK
Gluconokinase; COG3265 Gluconate kinase.
 
   
 0.657
RAM_36635
COG1802 Transcriptional regulators.
 
  
 0.652
RAM_40465
COG1802 Transcriptional regulators.
 
  
 0.650
cobD
Adenosylcobinamide-phosphate synthase CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
       0.637
RAM_30850
COG1802 Transcriptional regulators.
 
  
 0.625
PdhR-2
COG2186 Transcriptional regulators.
  
     0.620
RAM_17255
COG1802 Transcriptional regulators.
 
  
 0.618
RAM_19710
COG2186 Transcriptional regulators.
  
     0.615
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.