STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_05955COG1579 Zn-ribbon protein, possibly nucleic acid-binding. (245 aa)    
Predicted Functional Partners:
RAM_05950
NGG1p-interacting factor 3.
  
  
 0.904
RAM_05960
Bifunctional RNase H/acid phosphatase; COG0328 Ribonuclease HI.
  
  
 0.898
rbpA
Electron transport protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.701
RAM_41170
Hypothetical protein.
 
     0.657
RAM_11195
Signal transduction protein; COG0784 FOG: CheY-like receiver.
  
     0.643
RAM_10695
Hypothetical protein; COG2508 Regulator of polyketide synthase expression.
 
     0.639
RAM_43975
Hypothetical protein.
  
     0.633
HisC
COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase.
     
 0.613
RAM_46240
Hypothetical protein; May play a role in the intracellular transport of hydrophobic ligands.
 
     0.611
RAM_05930
Hypothetical protein.
 
     0.607
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.