STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_05965Hypothetical protein. (580 aa)    
Predicted Functional Partners:
RAM_13620
Hypothetical protein.
 
  
 0.659
RAM_14555
Hypothetical protein.
 
   
 0.645
RAM_01145
Phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases; Belongs to the UbiA prenyltransferase family.
 
  
 0.642
RAM_25290
Hypothetical protein.
  
     0.639
RAM_47665
Hypothetical protein.
  
     0.633
RAM_25295
Hypothetical protein.
  
     0.623
RAM_44960
COG1309 Transcriptional regulator.
  
    0.605
RAM_44080
OmpA family protein; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
 
   
 0.596
RAM_41645
Hypothetical protein.
  
     0.590
RAM_33840
Glycosyl transferase.
 
  
 0.586
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.