STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_05995COG1141 Ferredoxin. (270 aa)    
Predicted Functional Partners:
RAM_05990
Hypothetical protein.
 
     0.922
HcaD-2
Ferredoxin reductase; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
 
   
 0.843
RAM_24525
Hypothetical protein.
  
     0.753
RAM_22160
Hypothetical protein.
  
     0.727
RAM_40595
Hypothetical protein.
  
     0.708
RAM_46090
Hypothetical protein.
  
     0.707
RAM_41805
Hypothetical protein; COG2367 Beta-lactamase class A.
  
     0.702
RAM_30740
Hypothetical protein.
  
     0.685
RAM_14535
Hypothetical protein; COG1404 Subtilisin-like serine proteases.
  
     0.679
RAM_06615
Hypothetical protein.
  
     0.656
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.