STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_06020Hypothetical protein; COG0323 DNA mismatch repair enzyme (predicted ATPase). (984 aa)    
Predicted Functional Partners:
RAM_06015
Hypothetical protein.
 
     0.972
RAM_06030
Hypothetical protein.
 
     0.971
RAM_06010
Hypothetical protein.
 
     0.967
RAM_06025
Hypothetical protein.
 
     0.966
RAM_06035
Lipoprotein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins).
 
     0.901
RAM_04395
Hypothetical protein; COG0419 ATPase involved in DNA repair.
  
   
 0.773
RAM_00655
Hypothetical protein.
  
     0.767
RAM_45155
Hypothetical protein.
  
     0.762
RAM_31750
Hypothetical protein.
  
     0.743
RAM_13030
Hypothetical protein.
  
     0.742
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.