STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_06035Lipoprotein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins). (333 aa)    
Predicted Functional Partners:
RAM_06030
Hypothetical protein.
 
     0.908
RAM_06025
Hypothetical protein.
 
   
 0.907
RAM_06015
Hypothetical protein.
 
     0.883
RAM_06010
Hypothetical protein.
 
     0.882
RAM_06020
Hypothetical protein; COG0323 DNA mismatch repair enzyme (predicted ATPase).
 
     0.880
FtsX
Cell division transport system permease protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
 
 
 0.716
RAM_30875
Hypothetical protein.
   
 
 0.664
RAM_46950
Hypothetical protein; COG0147 Anthranilate/para-aminobenzoate synthases component I.
  
     0.563
RAM_39505
COG1396 Predicted transcriptional regulators.
  
     0.521
RAM_26575
Hypothetical protein.
  
     0.514
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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