STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PdhR-2COG2186 Transcriptional regulators. (244 aa)    
Predicted Functional Partners:
RAM_06085
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
 
     0.917
RAM_06105
Spermidine/putrescine ABC transporter substrate-binding protein; COG0687 Spermidine/putrescine-binding periplasmic protein.
 
     0.827
RAM_06110
COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
     0.743
RAM_10965
COG2186 Transcriptional regulators.
  
     0.726
RAM_06115
COG1177 ABC-type spermidine/putrescine transport system, permease component II.
 
     0.718
RAM_01360
COG2186 Transcriptional regulators.
  
     0.695
RAM_07680
COG2186 Transcriptional regulators.
  
     0.693
RAM_06100
COG3842 ABC-type spermidine/putrescine transport systems, ATPase components; Belongs to the ABC transporter superfamily.
 
    0.663
RAM_46525
COG2186 Transcriptional regulators.
  
     0.658
PdhR-6
COG2186 Transcriptional regulators.
  
     0.628
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.