STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_06305COG1451 Predicted metal-dependent hydrolase. (169 aa)    
Predicted Functional Partners:
RAM_06300
Hypothetical protein; COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2.
       0.623
RAM_10745
Hypothetical protein.
  
     0.519
RAM_36280
COG1985 Pyrimidine reductase, riboflavin biosynthesis.
       0.477
RAM_21245
Hypothetical protein.
 
     0.464
RAM_06295
APH/ChoK family kinase; COG0661 Predicted unusual protein kinase.
       0.446
RAM_34970
DsbA oxidoreductase.
  
    0.445
RAM_47200
NHL repeat-containing protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
 
    0.415
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.