STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_06315COG3480 Predicted secreted protein containing a PDZ domain. (368 aa)    
Predicted Functional Partners:
RAM_06310
Hypothetical protein.
 
     0.747
RAM_14310
COG3973 Superfamily I DNA and RNA helicases.
  
     0.550
HolA
Hypothetical protein; COG1466 DNA polymerase III, delta subunit.
 
     0.529
ComE
Competence protein ComEC; COG0658 Predicted membrane metal-binding protein.
       0.513
RAM_46065
Helicase; COG3973 Superfamily I DNA and RNA helicases.
  
     0.475
RAM_06325
Hypothetical protein.
 
     0.472
whiA
Putative sporulation transcription regulator whiA; Involved in cell division and chromosome segregation.
  
     0.445
whiB-6
WhiB family transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
   
 0.439
RAM_10745
Hypothetical protein.
 
     0.416
RAM_25375
COG0789 Predicted transcriptional regulators.
  
     0.404
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.