STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_06340COG1695 Predicted transcriptional regulators. (166 aa)    
Predicted Functional Partners:
RAM_06030
Hypothetical protein.
  
     0.739
prfB
Peptide chain release factor RF-2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
       0.729
RAM_09925
Integral membrane protein; COG1266 Predicted metal-dependent membrane protease.
 
    0.715
RAM_47480
Isoniazid inducible gene protein IniC; COG0699 Predicted GTPases (dynamin-related).
  
     0.705
RAM_03630
Hypothetical protein.
  
     0.701
RAM_06020
Hypothetical protein; COG0323 DNA mismatch repair enzyme (predicted ATPase).
  
     0.700
RAM_03635
Hypothetical protein.
  
     0.699
RAM_45155
Hypothetical protein.
  
     0.697
RAM_00655
Hypothetical protein.
  
     0.689
RAM_00455
COG1396 Predicted transcriptional regulators.
  
    0.682
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.