STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_06415COG1414 Transcriptional regulator. (260 aa)    
Predicted Functional Partners:
RAM_13390
UreA amidolyase; COG0439 Biotin carboxylase.
  
  
 0.774
RAM_28325
COG1414 Transcriptional regulator.
  
     0.768
RAM_40340
COG1414 Transcriptional regulator.
  
     0.752
RAM_35605
COG1414 Transcriptional regulator.
  
     0.680
HutH-2
COG2986 Histidine ammonia-lyase.
 
   
 0.663
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
   
 0.655
RAM_06430
Allantoate amidohydrolase; COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.
 
     0.621
hutI
COG1228 Imidazolonepropionase and related amidohydrolases.
 
   
 0.589
RAM_06435
N-formimino-L-glutamate deiminase; COG0402 Cytosine deaminase and related metal-dependent hydrolases.
 
     0.557
RAM_06410
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
       0.503
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.