STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hutUUrocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. (550 aa)    
Predicted Functional Partners:
HutH-2
COG2986 Histidine ammonia-lyase.
 
 0.999
hutI
COG1228 Imidazolonepropionase and related amidohydrolases.
 
 
 0.998
HutH-3
COG2986 Histidine ammonia-lyase.
 
 0.996
HutH
COG2986 Histidine ammonia-lyase.
  
 0.962
RAM_06435
N-formimino-L-glutamate deiminase; COG0402 Cytosine deaminase and related metal-dependent hydrolases.
 
  
 0.918
RAM_06430
Allantoate amidohydrolase; COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.
 
     0.821
RAM_06415
COG1414 Transcriptional regulator.
 
   
 0.663
RAM_12950
Metal-dependent hydrolase; COG1228 Imidazolonepropionase and related amidohydrolases.
 
  
 0.616
RAM_41475
Hypothetical protein; COG0823 Periplasmic component of the Tol biopolymer transport system.
  
  
 0.607
RAM_04595
Amidohydrolase; COG1228 Imidazolonepropionase and related amidohydrolases.
  
  
 0.566
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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