STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LntCOG0815 Apolipoprotein N-acyltransferase. (472 aa)    
Predicted Functional Partners:
RAM_17025
Hypothetical protein.
  
     0.644
RAM_44440
alpha-L-fucosidase/alpha-galactosidase.
  
     0.587
RAM_07780
COG3669 Alpha-L-fucosidase.
  
     0.572
RAM_06450
Lipase; COG1075 Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold.
       0.554
RAM_01855
TraJ; COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins.
 
     0.506
RAM_06460
Inorganic phosphate transporter PiT family protein; COG0306 Phosphate/sulphate permeases.
       0.497
FtsK-4
Cell division FtsK/SpoIIIE; COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins.
 
     0.496
RAM_06465
Hypothetical protein.
       0.494
RAM_17945
Hypothetical protein.
  
     0.489
RAM_06965
SARP family transcriptional regulator fused with ATPase domain; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
     0.461
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.