STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_06510COG1131 ABC-type multidrug transport system, ATPase component. (304 aa)    
Predicted Functional Partners:
RAM_06505
Hypothetical protein.
 
     0.931
RAM_33355
ABC transporter permease.
 
     0.723
RAM_33275
Integral membrane protein.
 
     0.703
RAM_33805
Hypothetical protein.
 
     0.653
RAM_47510
Hypothetical protein.
 
     0.652
RAM_47520
Hypothetical protein.
 
     0.629
RAM_16075
Hypothetical protein.
 
     0.626
HrpB
ATP-dependent helicase HrpB; COG1643 HrpA-like helicases.
   
 
 0.601
RAM_18600
Hypothetical protein.
 
     0.590
RAM_06520
ABC transporter substrate-binding protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; Belongs to the bacterial solute-binding protein 3 family.
     
 0.576
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.