STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_06540NPL/P60-family protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins). (372 aa)    
Predicted Functional Partners:
RAM_06550
Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
  
    0.802
RAM_06545
Hypothetical protein.
       0.801
RAM_06535
Hypothetical protein.
       0.796
FtsX
Cell division transport system permease protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
   
 
 0.667
RAM_30875
Hypothetical protein.
   
 
 0.664
RAM_06530
Integral membrane protein; COG1651 Protein-disulfide isomerase.
  
    0.484
RAM_30125
NLP/P60-family protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins).
 
  
0.460
ftsE
Cell division transport system ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
  
 
 0.426
RAM_39810
Hypothetical protein.
  
     0.420
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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