STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_06565Hypothetical protein. (163 aa)    
Predicted Functional Partners:
RAM_01635
Hypothetical protein.
  
     0.704
RAM_17090
Hypothetical protein.
  
     0.702
RAM_06560
AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
       0.655
RAM_25595
Hypothetical protein.
  
     0.649
RAM_06570
COG1472 Beta-glucosidase-related glycosidases; Belongs to the glycosyl hydrolase 3 family.
       0.521
PobA-2
4-hydroxybenzoate 3-monooxygenase; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
       0.489
RAM_09715
Hypothetical protein.
  
     0.476
RAM_06575
Hypothetical protein.
       0.463
RAM_09815
Hypothetical protein.
 
     0.439
RAM_43565
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.438
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.