STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_06590Hypothetical protein. (463 aa)    
Predicted Functional Partners:
RAM_38105
Beta-mannosidase; COG2755 Lysophospholipase L1 and related esterases.
  
 
 0.741
RAM_23785
SCP-like extracellular protein; COG2340 Uncharacterized protein with SCP/PR1 domains.
 
    0.686
GyrB
DNA gyrase subunit B; COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit.
     
 0.507
RAM_06595
Monooxygenase; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.
       0.480
RAM_06600
FMN reductase; COG0431 Predicted flavoprotein.
       0.480
RAM_25780
Hypothetical protein; COG1409 Predicted phosphohydrolases.
  
     0.474
GyrA
COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit.
     
 0.460
RAM_32460
COG2268 Uncharacterized protein conserved in bacteria.
  
     0.442
RAM_29415
COG4420 Predicted membrane protein.
  
     0.416
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.