STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_06600FMN reductase; COG0431 Predicted flavoprotein. (195 aa)    
Predicted Functional Partners:
RAM_06595
Monooxygenase; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.
 
 0.981
SsuD-7
Alkanesulfonate monooxygenase; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.
 
 0.936
SsuA-5
Sulfonate/nitrate/taurine ABC transporter periplasmic protein; COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
  
 
 0.930
SsuB-5
COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.
  
 
 0.917
CysH
Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite.
   
 
 0.917
SsuC-5
COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
  
 
  0.912
RAM_12785
Riboflavin kinase/FAD synthetase; COG0196 FAD synthase.
    
 0.907
RAM_32420
Riboflavin kinase; COG0196 FAD synthase; Belongs to the ribF family.
    
 0.907
NirA
COG0155 Sulfite reductase, beta subunit (hemoprotein); Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
   
 
 0.906
RAM_36220
cob(II)yrinic acid a,c-diamide reductase; COG0778 Nitroreductase.
    
 0.906
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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