STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_06615Hypothetical protein. (142 aa)    
Predicted Functional Partners:
RAM_06610
COG1680 Beta-lactamase class C and other penicillin binding proteins.
       0.773
RAM_06620
COG1309 Transcriptional regulator.
       0.763
RAM_05995
COG1141 Ferredoxin.
  
     0.656
RAM_24525
Hypothetical protein.
  
     0.558
RAM_06605
Hypothetical protein; COG0262 Dihydrofolate reductase.
       0.511
RAM_47910
Hypothetical protein.
 
     0.463
RAM_36755
COG0411 ABC-type branched-chain amino acid transport systems, ATPase component; Belongs to the binding-protein-dependent transport system permease family.
 
    0.450
RAM_41715
SARP family transcriptional regulator fused with ATPase domain; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
 
    0.446
RAM_39105
Integral membrane protein.
 
 
 0.443
RAM_11445
Hypothetical protein.
 
    0.438
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.