STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_06725Acetyltransferase; COG2388 Predicted acetyltransferase. (98 aa)    
Predicted Functional Partners:
RAM_33155
Hypothetical protein.
  
  
 0.959
RAM_26040
COG3237 Uncharacterized protein conserved in bacteria; Belongs to the UPF0337 (CsbD) family.
 
  
 0.599
RAM_45965
COG3237 Uncharacterized protein conserved in bacteria; Belongs to the UPF0337 (CsbD) family.
  
  
 0.540
RAM_06720
Terpene synthase.
       0.515
RAM_35670
Pyridoxamine 5'-phosphate oxidase.
  
    0.494
RAM_34455
Hypothetical protein.
      
 0.481
RAM_34460
COG0285 Folylpolyglutamate synthase.
      
 0.481
RAM_06730
Peptidase.
       0.473
RAM_06705
Hypothetical protein.
  
  
 0.469
RAM_00405
NADH-flavin reductase; COG0702 Predicted nucleoside-diphosphate-sugar epimerases.
  
    0.445
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.