STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_06725Acetyltransferase; COG2388 Predicted acetyltransferase. (98 aa)    
Predicted Functional Partners:
RAM_33155
Hypothetical protein.
  
  
 0.914
RAM_06720
Terpene synthase.
       0.515
RAM_06730
Peptidase.
       0.473
RAM_06715
Hypothetical protein; COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold.
       0.422
RAM_15360
COG1741 Pirin-related protein; Belongs to the pirin family.
 
    0.419
ndk
Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
     
 0.419
RAM_06695
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
     
 0.418
RAM_06705
Hypothetical protein.
     
 0.417
RAM_06700
Hypothetical protein.
       0.408
RAM_06710
COG0586 Uncharacterized membrane-associated protein.
       0.408
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.