STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_06875Hypothetical protein; COG0438 Glycosyltransferase. (375 aa)    
Predicted Functional Partners:
RAM_06885
Hypothetical protein.
 
     0.948
RAM_06880
COG1131 ABC-type multidrug transport system, ATPase component.
 
     0.924
RAM_06890
Lipase class 2; COG1075 Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold.
  
     0.671
RAM_41300
Hypothetical protein.
 
     0.634
RAM_41290
COG2834 Outer membrane lipoprotein-sorting protein.
  
   
 0.540
RAM_31325
ABC transporter permease; COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component.
 
     0.509
RAM_10340
Protease; COG0750 Predicted membrane-associated Zn-dependent proteases 1.
   
  
 0.424
NixA
High-affinity nickel-transport protein; COG3376 High-affinity nickel permease; Belongs to the NiCoT transporter (TC 2.A.52) family.
  
     0.404
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.